I'm looking for a story that was published on BCTS. It consists of about 3 or 4 volumes worth of story. In the first volume mankind has spaceships. The main character is a young man who is something like a janitor or maintenance person. The ship is attacked by monsters that turn crewmen into more monsters. But something different happens with this young man and he winds up turning into a young woman with powers to fight back. Many of the battles occur on the microscopic level as the populations of "good" creatures fight the populations of "bad" creatures.
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